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Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Pseudoroegneria spicata, Triticum monococcum, Triticum turgidum subsp. durum, Brachypodium distachyon, Triticum aestivum



ABOUT THIS RECORD

ID: MNEST003934
species: Oryza sativa
miRNA family: MIRf341
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 ATATAAGTCATTCTAGCATTG

miRNA*
 ATGCTAAAATGATTTACATTA

mismatches: 2
bulges: 0
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pre-miRNA
 TCGGTAAATTACGTACTCCCTCCGTTTCATAATATAAGTCATTCTAGCATTGTCCGTATTCATATGGATGTTAATAAATCTAGATATATAAATATGCGCA
ATGCTAAAATGATTTACATTATGAGATGGAGGAAGTACATGTGTGAAGG

dot-bracket secondary structure
............(((((.(((((((((((((((.(((((((((.(((((((((.((((((.(((((....(((.......))).))))).)))))).)))
)))))).))))))))).))))))))))))))).)))))...........


SIMILARITIES
miRBase osa-MIR808: 3e-17

PMRD osa-miR808: 3e-17

microPC miR809: 0.000000008		UniProt sp|Q6K1U0|P2C17_ORYSJ: 0.0003

RFAM MIR1122: 3e-21		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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